The Journal Archiving and Interchange Tag Set (Archiving
) defines elements and attributes that describe the content and metadata of journal
articles, including research and non-research articles, letters, editorials, and book
and product reviews. The Tag Set allows for descriptions of the full article content
or just the article header metadata.
The intent of the Archiving Tag Set is to preserve the intellectual content of journals independent of the form in which that content was originally delivered. This Tag Set enables an archive to capture structural and semantic components of existing material without modeling any particular sequence or textual format.
It was planned that Archiving could be used for conversion from a variety of journal source Tag Sets, with the intent of providing a single format:
in which publishers could deliver their content to a wide range of archives, and
into which archives could conveniently translate content from many publishers.
In order to enable description of the content used by the wide array of publishers, repositories, aggregators, etc., the Tag Set uses many loose structures, including some elements with nearly all content structures optional. Many attribute values in the Tag Set are data character values, accommodating any source values. Because some article components are prescriptive in nature (article metadata, for example, is a fairly specific sequence) the Archiving Tag Set includes a few completely generic structures for capturing semantic tagging that is not available natively in the Tag Set. Although publication order cannot always be preserved, particularly within the metadata, the Archiving Tag Set works harder than any of the other NLM Tag Sets in this Suite to allow almost any publication arrangement and to allow re-tagging as renaming without rearrangement during conversion.
The Archiving Tag Set has a distinct focus on conversion from multiple sources. That focus has made this Tag Set a large and inclusive one. Many elements have been created explicitly so that information tagged by publishers would not be discarded when they converted material from another Tag Set to this one (or one created from this Suite). Care has also been taken to provide several mechanisms (frequently, information classing attributes) to preserve the intellectual content of a document structure when that structure is converted from another Tag Set or schema to this one, even when there is no exact element equivalent of the structure.
The exact replication of the look and feel of any particular journal has not been a consideration. Therefore, many purely formatting mechanisms have not been included. At the same time, Archiving is intended to preserve observed content, without resorting to stylesheets or generation of textual elements. For that reason, labels, numbers, and symbols of tables, figures, sidebars, and the like can be recorded as elements, as can the punctuation and spaces inside bibliographic references and lists.
By design, this is a model for journal articles, such as the typical research article found in an STM journal, and not a model for complete journals. This Tag Set does not include an overarching model for a collection of articles. In addition, the following journal material is not described by this Tag Set:
Company, product, or service display advertising;
Job search or classified advertising;
Calendars, meeting schedules, and conference announcements (except as these can be tagged as ordinary articles, sub-articles, or sections within articles); and
Material specific to an individual journal, such as Author Guidelines, Policy and Scope statements, editorial or advisory boards, detailed indicia, etc.
The Journal Archiving Tag Set defines a document that is a top-level component of a journal such as an article, a book or product review, or a letter to the editor. Each such document is composed of one or more parts; if there is more than one part, they must appear in the following order:
Front matter (required). The article front matter contains the metadata for the article (also called article header information), for example, the article title, the journal in which it appears, the date and issue of publication for that issue of that journal, a copyright statement, etc. This is not textual front matter as appears in books, rather this is bibliographic information about the article and the journal in which it was published.
Body of the article (optional). The body of the article is the main textual and graphic content of the article. This usually consists of paragraphs and sections, which may themselves contain figures, tables, sidebars (boxed text), etc. The body of the article is optional to accommodate those repositories that just keep article header information and do not tag the textual content.
Back matter for the article (optional). If present, the article back matter contains information that is ancillary to the main text, such as a glossary, appendix, or list of cited references.
Floating Material (optional). A publisher may choose to place all the floating objects in an article and its back matter (such as tables, figures, boxed text sidebars, etc.) into a separate container element outside the narrative flow for convenience of processing.
Following the front, body, back, and floating material, there may be either one or more responses to the article or one or more subordinate articles:
Response. A response is a commentary on the article itself, for example, an opinion from an editor on the importance of the article or a reply from the original author to a letter concerning his article.
Sub-article. A sub-article is a small article that is completely contained inside another article.
Each element in the Tag Set is listed and identified, and specifics of the model of the element in this Tag Set are provided.
Each element is identified with a <tag>, element name, and definition, as it is listed in Section 5 Tag Suite Components. Following that appears the modeling information specific to this Tag Set:
any attributes the element may have in this Tag Set, including:
the attribute name
the attribute’s informal expanded name
the element’s content model, described in narrative form, in which:
the relationships among elements or groups of elements are specified, for
example Any combination of
if the structures may occur in any
sequence, or The following, in order
if the structures must
appear in the specified sequence
the elements are identified by their <tag>s and Element Names
notes indicating occurrence:
If the relationship indicator is Any combination of
any of the elements therein may occur zero or more times in any sequence
If there is any other relationship indicator, it is assumed that an
element must occur, and may occur only once unless there is a
statement otherwise. Such statement may be zero or one
, one or more
,
or zero or more
.
Note that for the convenience of the user these models are provided as non-normative XML DTDs, W3C XML Schemas (XSD), and as RELAX NG Schemas (RNGs), which may be found at http://jats.nlm.nih.gov.
6.4.1 <abbrev> Abbreviation or Acronym
6.4.2 <abbrev-journal-title> Abbreviated Journal Title
6.4.4 <access-date> Access Date for Cited Work
6.4.6 <addr-line> Address Line
6.4.7 <address> Address/Contact Information
6.4.9 <aff-alternatives> Affiliation Alternatives
6.4.10 <alt-text> Alternate Text Name (For a Figure, etc.)
6.4.11 <alt-title> Alternate Title
6.4.12 <alternatives> Alternatives For Processing
6.4.13 <annotation> Annotation in a Citation
6.4.16 <app-group> Appendix Group
6.4.17 <array> Array (Simple Tabulation)
6.4.19 <article-categories> Article Grouping Data
6.4.20 <article-id> Article Identifier
6.4.21 <article-meta> Article Metadata
6.4.22 <article-title> Article Title
6.4.24 <author-comment> Author Comment
6.4.25 <author-notes> Author Note Group
6.4.26 <award-group> Award Group
6.4.27 <award-id> Award Identifier
6.4.30 <body> Body of the Document
6.4.32 <boxed-text> Boxed Text
6.4.34 <caption> Caption of a Figure, Table, etc.
6.4.35 <chapter-title> Chapter Title in a Citation
6.4.36 <chem-struct> Chemical Structure (Display)
6.4.37 <chem-struct-wrap> Chemical Structure Wrapper
6.4.38 <col> Table Column (XHTML table model)
6.4.39 <colgroup> Table Column Group (XHTML table model)
6.4.40 <collab> Collaborative (Group) Author
6.4.41 <comment> Comment in a Citation
6.4.42 <compound-kwd> Compound Keyword
6.4.43 <compound-kwd-part> Compound Keyword Part
6.4.44 <compound-subject> Compound Subject Name
6.4.45 <compound-subject-part> Compound Subject Part Name
6.4.46 <conf-acronym> Conference Acronym
6.4.47 <conf-date> Conference Date
6.4.48 <conf-loc> Conference Location
6.4.49 <conf-name> Conference Name
6.4.50 <conf-num> Conference Number
6.4.51 <conf-sponsor> Conference Sponsor
6.4.52 <conf-theme> Conference Theme
6.4.53 <conference> Conference Information
6.4.55 <contrib-group> Contributor Group
6.4.56 <copyright-holder> Copyright Holder
6.4.57 <copyright-statement> Copyright Statement
6.4.58 <copyright-year> Copyright Year
6.4.59 <corresp> Correspondence Information
6.4.60 <country> Country: in an Address
6.4.62 <custom-meta> Custom Metadata
6.4.63 <custom-meta-group> Custom Metadata Group
6.4.65 <date-in-citation> Date within a Citation
6.4.67 <def> Definition List: Definition
6.4.68 <def-head> Definition List: Definition Head
6.4.69 <def-item> Definition List: Definition Item
6.4.70 <def-list> Definition List
6.4.72 <disp-formula> Formula, Display
6.4.73 <disp-formula-group> Formula, Display Group
6.4.74 <disp-quote> Quote, Displayed
6.4.75 <edition> Edition, Cited
6.4.76 <element-citation> Element Citation
6.4.77 <elocation-id> Electronic Location Identifier
6.4.79 <equation-count> Equation Count
6.4.81 <ext-link> External Link
6.4.82 <fax> Fax Number: in an Address
6.4.84 <fig-count> Figure Count
6.4.85 <fig-group> Figure Group
6.4.86 <floats-group> Floating Element Group
6.4.88 <fn-group> Footnote Group
6.4.91 <front-stub> Stub Front Metadata
6.4.92 <funding-group> Funding Group
6.4.93 <funding-source> Funding Source
6.4.94 <funding-statement> Funding Statement
6.4.95 <given-names> Given (First) Names
6.4.96 <glossary> Glossary Elements List
6.4.97 <glyph-data> Glyph Data for a Private Character
6.4.98 <glyph-ref> Glyph Reference for a Private Character
6.4.99 <gov> Government Report, Cited
6.4.101 <history> History: Document History
6.4.103 <inline-formula> Formula, Inline
6.4.104 <inline-graphic> Graphic, Inline
6.4.105 <inline-supplementary-material> Inline Supplementary Material
6.4.106 <institution> Institution Name: in an Address
6.4.110 <issue-id> Issue Identifier
6.4.111 <issue-part> Issue Part
6.4.112 <issue-sponsor> Issue Sponsor
6.4.113 <issue-title> Issue Title
6.4.115 <journal-id> Journal Identifier
6.4.116 <journal-meta> Journal Metadata
6.4.117 <journal-subtitle> Journal Subtitle (Full)
6.4.118 <journal-title> Journal Title (Full)
6.4.119 <journal-title-group> Journal Title Group
6.4.121 <kwd-group> Keyword Group
6.4.122 <label> Label (of an Equation, Figure, Reference, etc.)
6.4.123 <license> License Information
6.4.124 <license-p> License Paragraph
6.4.127 <long-desc> Long Description
6.4.130 <meta-name> Metadata Data Name for Custom Metadata
6.4.131 <meta-value> Metadata Data Value for Custom Metadata
6.4.132 <milestone-end> Milestone End
6.4.133 <milestone-start> Milestone Start
6.4.134 <mixed-citation> Mixed Citation
6.4.135 <mml:math> Math (MathML 2.0 Tag Set)
6.4.136 <monospace> Monospace Text (Typewriter Text)
6.4.139 <name-alternatives> Name Alternatives
6.4.140 <named-content> Named Special (Subject) Content
6.4.141 <nlm-citation> NLM Citation
6.4.142 <note> Note in a Reference List
6.4.144 <object-id> Object Identifier
6.4.145 <on-behalf-of> On Behalf of
6.4.146 <open-access> Open Access
6.4.148 <overline-end> Overline End
6.4.149 <overline-start> Overline Start
6.4.151 <page-count> Page Count
6.4.152 <page-range> Page Ranges
6.4.153 <part-title> Part Title in a Citation
6.4.154 <patent> Patent Number, Cited
6.4.155 <permissions> Permissions
6.4.156 <person-group> Person Group for a Cited Publication
6.4.157 <phone> Phone Number: in an Address
6.4.159 <preformat> Preformatted Text
6.4.161 <principal-award-recipient> Principal Award Recipient
6.4.162 <principal-investigator> Principal Investigator
6.4.163 <product> Product Information
6.4.164 <pub-date> Publication Date
6.4.165 <pub-id> Publication Identifier for a Cited Publication
6.4.167 <publisher-loc> Publisher’s Location
6.4.168 <private-char> Private Character (Custom or Unicode™)
6.4.169 <publisher-name> Publisher’s Name
6.4.171 <ref-count> Reference Count
6.4.172 <ref-list> Reference List (Bibliographic)
6.4.173 <related-article> Related Article Information
6.4.174 <related-object> Related Object Information
6.4.176 <role> Role or Function Title of Contributor
6.4.178 <sans-serif> Sans Serif
6.4.181 <sec-meta> Section Metadata
6.4.182 <self-uri> URI for This Same Article Online
6.4.185 <series-text> Series Text: Header Text to Describe
6.4.186 <series-title> Series Title
6.4.188 <sig-block> Signature Block
6.4.193 <statement> Statement, Formal
6.4.195 <strike> Strike Through
6.4.196 <string-conf> String Conference Name
6.4.197 <string-date> Date as a String
6.4.198 <string-name> Name of Person (Unstructured)
6.4.199 <styled-content> Styled Special (Subject) Content
6.4.201 <sub-article> Sub-article
6.4.202 <subj-group> Subject Group
6.4.203 <subject> Subject Grouping Name
6.4.204 <subtitle> Document Subtitle
6.4.207 <supplement> Supplement Information
6.4.208 <supplementary-material> Supplementary Material
6.4.210 <table> Table (XHTML table model)
6.4.211 <table-count> Table Count
6.4.212 <table-wrap> Table Wrapper
6.4.213 <table-wrap-foot> Table Wrapper Footer
6.4.214 <table-wrap-group> Table Wrapper Group
6.4.215 <target> Target of an Internal Link
6.4.216 <tbody> Table Body (XHTML table model)
6.4.217 <td> Table Data Cell (XHTML table model)
6.4.218 <term> Definition List: Term
6.4.219 <term-head> Definition List: Term Head
6.4.220 <tex-math> TeX Math Equation
6.4.221 <textual-form> Textual Form
6.4.222 <tfoot> Table Footer (XHTML table model)
6.4.223 <th> Table Header Cell (XHTML table model)
6.4.224 <thead> Table Header (XHTML table model)
6.4.225 <time-stamp> Time Stamp for Cited Work
6.4.227 <title-group> Title Group
6.4.228 <tr> Table Row (XHTML table model)
6.4.229 <trans-abstract> Translated Abstract
6.4.230 <trans-source> Translated Source
6.4.231 <trans-subtitle> Translated Subtitle
6.4.232 <trans-title> Translated Title
6.4.233 <trans-title-group> Translated Title Group
6.4.235 <underline-end> Underline End
6.4.236 <underline-start> Underline Start
6.4.237 <unstructured-kwd-group> Unstructured Keyword Group
6.4.238 <uri> Uniform Resource Indicator (URI)
6.4.239 <verse-group> Verse Form for Poetry
6.4.240 <verse-line> Line of a Verse
6.4.241 <volume> Volume Number
6.4.242 <volume-id> Volume Identifier
6.4.243 <volume-series> Volume Series
6.4.244 <word-count> Word Count
6.4.245 <x> X - Generated Text and Punctuation
Each attribute in the Tag Set is listed and identified, and specifics of the model of the attribute in this Tag Set are provided.
Each attribute is identified with a name, expanded information name, and definition,
as it is listed in Section 5 Tag Suite Components. For some attributes a Usage
section provides additional information on how the attribute is intended to be used
or interpreted.
Following that appears the modeling information specific to this Tag Set. For attributes that are associated with only one element, or for which the usage is the same for all elements in the Tag Set, there appears:
a list of all of the elements associated with the attribute,
an optionality description:
this attribute may be used if the element is used
means the attribute is optional
this attribute must be used if the element is used
means the attribute is required
if the attribute has a fixed value the statement this attribute must have the value …
a table showing the allowed value(s) of the attribute and describing the meaning of each value. If there is a default value, that value appears in bold.
If there are more than one element associated with an attribute in the Tag Set and those elements use the attribute differently (for example, one element provides a default value for the attribute and on other elements there is no default value) the specifics are repeated for each group of elements that has the same usage and values for the attribute.
6.5.1 @abbr Abbreviation (XHTML table model)
6.5.2 @abbrev-type Type of Journal Title Abbreviation
6.5.3 @abstract-type Type of Abstract
6.5.4 @align Horizontal Alignment (XHTML table model)
6.5.6 @altimg Alternate Image (MathML 2.0 Tag Set)
6.5.7 @alttext Alternate Text (MathML 2.0 Tag Set)
6.5.8 @alt-title-type Type of Alternate Title
6.5.9 @arrange Arrangement of Subscripts and Superscripts
6.5.10 @article-type Type of Article
6.5.11 @award-type Type of Award
6.5.12 @axis Axis (XHTML table model)
6.5.13 @baseline Baseline (MathML 2.0 Tag Set)
6.5.14 @baseline-shift Baseline Shift
6.5.15 @border Border (Frame) around a Table (XHTML table model)
6.5.16 @cellpadding Cell Padding (XHTML table model)
6.5.17 @cellspacing Cell Spacing (XHTML table model)
6.5.18 @char Table Cell Alignment Character (XHTML table model)
6.5.19 @charoff Table Character Offset (XHTML table model)
6.5.20 @class Class (MathML 2.0 Tag Set)
6.5.21 @collab-type Type of Collaboration
6.5.22 @colspan Column Span (XHTML table model)
6.5.23 @content-type Type of Content
6.5.24 @continued-from Continued From
6.5.25 @contrib-type Type of Contribution
6.5.26 @corresp Corresponding Author
6.5.30 @date-type Type of Date
6.5.32 @description Description of a Private Character
6.5.33 @display Display (MathML 2.0 Tag Set)
6.5.34 @disp-level Display Level of a Heading
6.5.35 @document-id Document Identifier
6.5.36 @document-id-type Document Identifier Type
6.5.37 @document-type Document Type
6.5.38 @dtd-version Version of the Tag Set (DTD)
6.5.39 @elocation-id Elocation Identifier
6.5.40 @equal-contrib Equal Contribution
6.5.41 @ext-link-type Type of External Link
6.5.42 @fig-type Type of Figure
6.5.43 @fn-type Type of Footnote
6.5.44 @fontchar Font Character Table Offset
6.5.47 @frame Frame (XHTML table model)
6.5.48 @glyph-data Glyph Data Character Being Referenced
6.5.49 @headers Headers (XHTML table model)
6.5.50 @height Height (MathML 2.0 Tag Set)
6.5.52 @initials Initials of Given Names
6.5.53 @issue Issue Number of a Related Article
6.5.54 @journal-id Journal Identifier of a Related Article
6.5.55 @journal-id-type Type of Journal Identifier
6.5.56 @kwd-group-type Keyword Authority
6.5.57 @license-type Type of License
6.5.58 @link-type Type of Link (for a Related Object)
6.5.59 @list-content List Content
6.5.60 @list-type Type of List
6.5.61 @macros Macros (MathML 2.0 Tag Set)
6.5.62 @mime-subtype Mime Subtype
6.5.64 @mode Mode (MathML 2.0 Tag Set)
6.5.68 @notes-type Type of Notes
6.5.69 @object-id Object Identifier
6.5.70 @object-id-type Object Identifier Type
6.5.71 @object-type Object Type
6.5.72 @orientation Orientation
6.5.73 @other Other (MathML 2.0 Tag Set)
6.5.74 @overflow Overflow (MathML 2.0 Tag Set)
6.5.75 @page Page of Related Article
6.5.76 @person-group-type Type of People in the Person Group
6.5.78 @prefix-word Prefix Word (For a List Item)
6.5.79 @preformat-type Type of Preformatted Text
6.5.80 @product-type Type of Product
6.5.81 @pub-id-type Type of Publication Identifier
6.5.82 @pub-type Type of Publication
6.5.83 @publication-format Publication Format
6.5.84 @publication-type Type of Publication
6.5.85 @publisher-type Type of Publisher
6.5.87 @ref-type Type of Cross-Reference
6.5.88 @related-article-type Type of Related Article
6.5.89 @resolution Resolution of the Glyph Bitmap
6.5.90 @response-type Type of Response
6.5.91 @rid Reference to an Identifier
6.5.92 @rowspan Row Span (XHTML table model)
6.5.93 @rules Rules (XHTML table model)
6.5.94 @scope Scope (XHTML table model)
6.5.95 @sec-type Type of Section
6.5.97 @source-id Source Identifier
6.5.98 @source-id-type Source Identifier Type
6.5.99 @source-type Source Type
6.5.100 @span Span (XHTML table model)
6.5.101 @specific-use Specific Use
6.5.102 @style Style (XHTML table model; MathML 2.0 Tag Set)
6.5.103 @style-type Style Type
6.5.104 @subj-group-type Type of Subject Group
6.5.105 @summary Summary (XHTML table model)
6.5.106 @supplement-type Type of Supplement
6.5.108 @target-type Type of Target
6.5.109 @type Type (MathML 2.0 Tag Set)
6.5.110 @underline-style Appearance of the Underline
6.5.112 @valign Vertical Alignment (XHTML table model)
6.5.113 @version Version of TeX or LaTeX
6.5.114 @vol Volume of Related Article
6.5.115 @width Width (XHTML table model; MathML 2.0 Tag Set)
6.5.116 @xlink:actuate Actuating the Link
6.5.117 @xlink:href Href (Linking Mechanism)
6.5.118 @xlink:role Role of the Link
6.5.119 @xlink:show Showing the Link
6.5.120 @xlink:title Title of the Link
6.5.121 @xlink:type Type of Link
6.5.122 @xmlns:mml MathML Namespace Declaration
6.5.123 @xmlns:xlink XLink Namespace Declaration
6.5.124 @xmlns:xsi XML Schema Namespace Declaration
6.5.127 @xref Cross-Reference (MathML 2.0 Tag Set)
6.5.128 @x-size X Size of the Glyph
6.5.129 @xsi:schemaLocation Schema Location (MathML 2.0 Tag Set)