◇◆
<alternatives> Alternatives For Processing
Container element used to hold a group of processing alternatives, for example, a
single <graphic> that ships in several formats (tif, gif, and jpeg) or in different resolutions. This element is a physical grouping to contain multiple
logically equivalent (substitutable) versions of the same information object. Typically
these are processing alternatives and the reader is expected to see only one version
of the object.
Usage/Remarks
<alternatives> is neither inherently block nor inline in nature, because the block or inline quality
is determined by context and usage. Typical examples for this element are a <graphic> that ships with a document in multiple versions (for example, as a .tif, a .jpg, and an SVG file); or an <inline-formula> that is available as a .tif (<inline-graphic>), encoded in MathML, as well as encoded in TeX, and as a plain ASCII.
Accessibility
This element, by providing a container for
alternative versions of a graphic or media object, enables providing a textual alternative
to any graphic or media object as well as providing an enlarged graphic version for
accessibility.
Models and Context
May be contained in
<abbrev>, <abstract>, <ack>, <addr-line>, <aff>, <alt-title>, <anonymous>, <answer>, <app>, <app-group>, <array>, <article-title>, <attrib>, <award-id>, <bio>, <body>, <bold>, <book-app-group>, <book-title>, <book-volume-id>, <book-volume-number>, <boxed-text>, <chapter-title>, <chem-struct>, <chem-struct-wrap>, <collab>, <comment>, <compound-kwd-part>, <compound-subject-part>, <conf-acronym>, <conf-loc>, <conf-name>, <conf-num>, <conf-sponsor>, <conf-theme>, <copyright-statement>, <corresp>, <def-head>, <degrees>, <disp-formula>, <disp-quote>, <edition>, <element-citation>, <email>, <etal>, <explanation>, <ext-link>, <fax>, <fig>, <fig-group>, <fixed-case>, <floats-group>, <funding-source>, <funding-statement>, <given-names>, <glossary>, <gov>, <index>, <index-div>, <index-group>, <inline-formula>, <inline-supplementary-material>, <institution>, <issue>, <issue-part>, <issue-title>, <italic>, <kwd>, <label>, <license-p>, <meta-name>, <meta-value>, <mixed-citation>, <monospace>, <named-book-part-body>, <named-content>, <nav-pointer>, <notes>, <on-behalf-of>, <option>, <overline>, <p>, <part-title>, <patent>, <phone>, <prefix>, <preformat>, <product>, <publisher-loc>, <publisher-name>, <question>, <question-preamble>, <rb>, <ref-list>, <related-article>, <related-object>, <role>, <roman>, <sans-serif>, <sc>, <sec>, <see>, <see-also>, <see-also-entry>, <see-entry>, <self-uri>, <series>, <serif>, <sig>, <sig-block>, <source>, <speaker>, <std-organization>, <strike>, <string-conf>, <string-date>, <string-name>, <styled-content>, <sub>, <subject>, <subtitle>, <suffix>, <sup>, <supplement>, <supplementary-material>, <support-source>, <surname>, <table-wrap>, <target>, <td>, <term>, <term-head>, <th>, <title>, <toc>, <toc-div>, <toc-entry>, <toc-group>, <trans-abstract>, <trans-source>, <trans-subtitle>, <trans-title>, <underline>, <unstructured-kwd-group>, <uri>, <verse-line>, <version>, <volume>, <volume-id>, <volume-series>, <volume-title>, <xref>
Description
The following, in order:
- <object-id> Object Identifier, zero or more
- One or more of any of:
- <array> Array (Simple Tabulation)
- <chem-struct> Chemical Structure (Display)
- <code> Code
- <graphic> Graphic
- Inline Display Elements
- <inline-supplementary-material> Inline Supplementary Material
- <media> Media Object
- <preformat> Preformatted Text
- <supplementary-material> Supplementary Material
- <table> Table (JATS table model)
- <textual-form> Textual Form
- Math Elements
Content Model
<!ELEMENT alternatives %alternatives-model; >
Expanded Content Model
((object-id)*, (array | chem-struct | code | graphic | inline-graphic | inline-media | inline-supplementary-material | media | preformat | private-char | supplementary-material | table | textual-form | tex-math | mml:math)+)
Tagged Samples
Alternative figure graphics, differentiated by usage
...
<fig id="f3" position="float">
<label>FIG. 3.</label>
<caption>...</caption>
<alternatives>
<graphic specific-use="print" xlink:href="1.4821168.figures.highres.f3.zip"/>
<graphic specific-use="online" xlink:href="1.4821168.figures.online.f3.jpg"/>
</alternatives>
</fig>
...
Alternatives to a table inside <table-wrap>
...
<sec id="bid.268">
<title>Taxids</title>
<table-wrap id="bid.269">
<label>1</label>
<caption>
<title>Files on the taxonomy FTP site.</title>
</caption>
<alternatives>
<table frame="box" rules="all" cellpadding="5">
<thead>
<tr>
<th align="left" valign="top">File</th>
<th align="left" valign="top">Uncompresses to</th>
<th align="left" valign="top">Description</th>
</tr>
</thead>
<tbody>...</tbody>
</table>
<graphic xlink:href="T-tax-id-pairs12.gif"/>
<graphic xlink:href="T-tax-id-pairs12.jpg"/>
</alternatives>
<table-wrap-foot>
<fn symbol="a" id="mul2">
<p>For non-UNIX users, the file taxdmp.zip includes the
same (zip compressed) data.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Each taxon in the database has a unique identifier,
its taxid. ...</p>
</sec>
...
Equation alternatives (textual form, graphical, MathML)
One textual form, one graphical, and the third tagged MathML
...
<p>... This can be seen in the following:
<disp-formula>
<alternatives>
<textual-form>(a + 3)<sup>2</sup> - (10 - b) = 24</textual-form>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink"
xlink:href="fors2682.f3">
<object-id>463492</object-id>
</graphic>
<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML">
<mml:mrow>
<mml:msup>
<mml:mfenced>
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mo>+</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>−</mml:mo>
<mml:mfenced>
<mml:mrow>
<mml:mi>10</mml:mi>
<mml:mo>−</mml:mo>
<mml:mn>b</mml:mn>
</mml:mrow>
</mml:mfenced>
<mml:mo>=</mml:mo>
<mml:mn>24</mml:mn>
</mml:mrow>
</mml:math>
</alternatives>
</disp-formula>
</p>
...
Equation alternatives (TeX)
One tagged MathML, one in TeX, and one graphical
...
<disp-formula id="eq_002">
<label>(2)</label>
<alternatives>
<graphic xlink:href="graphic/eq_002.png"/>
<mml:math>
<mml:mstyle displaystyle="true" scriptlevel="0">
<mml:mi mathvariant="normal">Δ</mml:mi>
<mml:mi>x</mml:mi>
<mml:mi mathvariant="normal">Δ</mml:mi>
<mml:mi>p</mml:mi>
<mml:mo>≥</mml:mo>
<mml:mfrac>
<mml:mn>1</mml:mn>
<mml:mn>2</mml:mn>
</mml:mfrac>
<mml:mi class="MJX-variant">ℏ</mml:mi>
</mml:mstyle>
</mml:math>
<tex-math><![CDATA[\displaystyle \Delta x \Delta p \geq \frac{1}{2} \hbar]]></tex-math>
</alternatives>
</disp-formula>
...
Media alternatives, differentiated by mime subtypes
...
<fig id="f1" orientation="portrait" position="float">
<label>FIG. 1.</label>
<caption>
<p>(a) Schematic of the working principles of HFM, (b) a typical application
scheme for an electric bias in HFM, (c) regulation the conformations and
dynamics (trapping, concentration, and sudden stretching) of λ-DNA molecules
in HFM, and (d) schematic of the trapping location regulation (enhanced online).
[URL: <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1063/1.4762852.1">
http://dx.doi.org/10.1063/1.4762852.1</ext-link>]
<alternatives>
<media id="v1" mime-subtype="avi" mimetype="video" orientation="portrait"
position="anchor" specific-use="original-format" xlink:href="v1"/>
<media mime-subtype="mpeg" mimetype="video" orientation="portrait"
position="anchor" specific-use="archival-format" xlink:href="v1"/>
<media mime-subtype="x-flv" mimetype="video" orientation="portrait"
position="anchor" specific-use="online-format" xlink:href="v1"/>
</alternatives>
</p>
</caption>
<graphic xlink:href="f1"/>
<graphic id="f1a" xlink:href="dummy1.png"/>
<graphic id="f1b" xlink:href="dummy2.png"/>
<graphic id="f1c" xlink:href="dummy3.png"/>
<graphic id="f1d" xlink:href="dummy4.png"/>
</fig>
...
Table alternatives including supplementary material
...
<table-wrap id="pbio-0020328-t002" position="float">
<label>Table 2</label>
<caption>
<title>Genes Activated in the Mother-Cell Line of Gene Expression</title>
</caption>
<alternatives>
<graphic xlink:href="pbio.0020328.t002.tif"/>
<table frame="box" rules="all" cellpadding="5">...</table>
<supplementary-material id="S1" xmlns:xlink="http://www.w3.org/1999/xlink"
xlink:title="local_file" xlink:href="pbio-0020328-t002.xls"
mimetype="application/vnd.ms-excel">
<label>Supporting Material</label>
<caption>
<p>Supplementary Microsoft Excel file (raw study data) supplied by authors.</p>
</caption>
</supplementary-material>
</alternatives>
<table-wrap-foot>...</table-wrap-foot>
</table-wrap>
...
Triple bond glyph
To a chemist, a triple bond is not the same character as Unicode x2261, but <alternatives> may be used to display the triple bond visually and still stay within Unicode.
...
<alternatives>
<textual-form specific-use="unicode-look-alike">≡</textual-form>
<private-char name="Triple Bond" description="Chemistry Triple Bond">
<glyph-data id="tbond" format="PBM" resolution="300"
x-size="16" y-size="32">
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
0001111111111111111111111100000
0000000000000000000000000000000
0000000000000000000000000000000
0001111111111111111111111100000
0000000000000000000000000000000
0000000000000000000000000000000
0001111111111111111111111100000
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
0000000000000000000000000000000
</glyph-data>
</private-char>
</alternatives>
...